run_medfilter = 0
run_detect_radhit = 0
have_uncertainties = 0
compute_uncertainties_internally = 0
run_fiducial_image_frame = 1
run_mosaic_interp = 0
run_detect_outlier = 0
run_mosaic_proj = 0
run_mosaic_covg = 0
run_mosaic_dual_outlier = 0
run_level = 0
run_mosaic_outlier = 0
run_mosaic_rmask = 0
run_mosaic_reinterp = 0
run_mosaic_coadder = 0
run_mosaic_combiner = 0
create_rmask_mosaic = 0
NICE = 0
verbose = 1

USE_OUTLIER_FOR_RMASK = 1
USE_DUAL_OUTLIER_FOR_RMASK = 1
USE_REFINED_POINTING = 1

MOSAIC_PIXEL_RATIO_X = 2
MOSAIC_PIXEL_RATIO_Y = 2

DMASK_DIR = Dmask
#INTERP_DIR = Interp_drizzle1
#COADDER_DIR = Coadd_drizzle1
#COMBINER_DIR = Combine_drizzle1
#REINTERP_DIR = REINT
OUTPUT_DIR = fif

IMAGE_STACK_FILE_NAME = master.lst
#PMASK_FILE_NAME = chan1_pmask.fits
#DCE_STATUS_MASK_LIST = chan1_dmask.lis
#SIGMALIST_FILE_NAME = output_mosaic_outlier/Sigma/SigmaList.txt

DCE_Status_Mask_Fatal_BitPattern = 24324
PMask_Fatal_BitPattern =  18304
RMask_Fatal_BitPattern = 7

 &FIDUCIALIMAGEFRAMEIN
#   Edge_Padding is given in terms of pixels,
   Edge_Padding = 100,
# if specified CROTA2 is used for FIF without modification,
   CROTA2 = A,
 &END

 &MEDFILTER
  Window_X = 21,
  Window_Y = 21,
  N_Outliers_Per_Window = 100,
&END

&DETECT_RADHIT
# Detection_Max_Area (Optional, default is 3),
  Detection_Max_Area      = 2,
# Segmentation_Threshold (Optional, default is 3.),
  Segmentation_Threshold  = 3.,
#  Radhit_Threshold (Optional, default is 6.),
  Radhit_Threshold        = 10.,
&END

 &SNESTIMATORIN
   Gain = 1290,
   Confusion_Sigma = 0,
   Read_Noise = 90,
 &END

&MOSAICINTIN
# INTERP_METHOD = 1(default), 2(Drizzle),3(Grid),
   INTERP_METHOD = 1,
   DRIZ_FAC = 0.8,
&END

&MOSAICREINTIN
&END

&DETECT
# the maximum number of pixels in a cluster to be declared a detection,
# for bigger clusters the program raises the detection threshold,
# and either splits the cluster into 2 or shrinks it down to the required size,
  Detection_Max_Area         = 9,
# the minimum number of pixels in a cluster to be declared a detection,
# include all the clusters here, since we are looking for radhits,
  Detection_Min_Area         = 0,
  Detection_Threshold        = 5,
&END

&MOSAICPROJIN
&END

&MOSAICCOVGIN
&END

&MOSAICDUALOUTLIERIN
  MAX_OUTL_IMAGE = 2,
  MAX_OUTL_FRAC = 0.2,
#   TILE_XSIZ = 500,
#   TILE_YSIZ = 500,
&END

&LEVEL
  Threshold_Ratio   = 0.5,
# (Optional, default is 0.500000),
&END

&MOSAICOUTLIERIN
   BOTTOM_THRESHOLD = 3.,
   TOP_THRESHOLD = 2.5,
   MIN_PIX_NUM = 1,
#   TILE_XSIZ = 500,
#   TILE_YSIZ = 500,
&END

&MOSAICRMASKIN
  RM_THRESH = 0.8,
  MIN_COVERAGE = 3,
  MAX_COVERAGE = 100,
&END


&MOSAICCOADDIN
   TILEMAX_X = 1000,
   TILEMAX_Y = 1000,
&END