###-Meta-Data-###:Flow=edu.caltech.ipac.sirtf.mopexUI.modules.apexSingleFrame.ApexOneFrameFlow
###-Meta-Data-###:User-Description=ApexOneFrame Processing Flow
###-Meta-Data-###:FlowActive=true


have_uncertainties = 1
compute_uncertainties_internally = 0
run_detect_medfilter = 1
run_gaussnoise = 1
run_pointsourceprob = 1
run_bright_detect = 0
run_detect = 1
run_extract_medfilter = 1
run_fit_radius = 0
run_sourcestimate = 1
run_aperture = 1
run_select = 1
verbose = 1
delete_intermediate_files = 0
NICE = 0

use_psp_to_detect = 1
use_background_subtracted_image_for_fitting = 1
use_background_subtracted_image_for_aperture = 0

select_conditions = "SNR > 5.0 and deblend ! NO and deblend ! PO and deblend ! AO and deblend ! PAO"
select_columns = "srcid,detid,RA,delta_RA,Dec,delta_Dec,delta_RAD,x,delta_x,y,delta_y,delta_xy,flux,delta_flux,SNR,chi2/dof,ps_chi2/dof,status,deblend,aperture1,aperture2,aperture3,bad_pix1,bad_pix2,bad_pix3"

PRF_file_name = mips24_prf_mosaic_2.45_4x.fits

#OUTPUT_DIR = apex_1frame_M1

#INPUT_FILE_NAME = M1.fits
#SIGMA_FILE_NAME = M1_unc.fits
#COVERAGE_MAP = M1_cov.fits

&DETECT_MEDFILTER
  Window_X = 25,
  Window_Y = 25,
  N_Outliers_Per_Window = 100,
&END
 
 &EXTRACT_MEDFILTER
  Window_X = 45,
  Window_Y = 45,
  N_Outliers_Per_Window = 50,
 &END

&GAUSSNOISE
  Window_X = 25,
  Window_Y = 25,
  N_Outliers_Per_Window = 100,
&END

&POINTSOURCEPROB
# the Resample Factors are the ratios of the image pixel size to the PRF sampling size,
# the same as for SOURCESTIMATE,
  PRF_ResampleX_Factor      = 4,
  PRF_ResampleY_Factor      = 4,
# the size of the input image to be matched by the PRF, in input image pixels,
  PRF_Xsize        = 3,
  PRF_Ysize        = 3,
&END

&PSP_GAUSSNOISE
# if set Input_Type to snr_input in DETECT below, set following to zero,
  Window_X = 25,
  Window_Y = 25,
  N_Outliers_Per_Window = 100,
&END

&FIT_RADIUS
&END

&DETECT
# the maximum number of pixels in a cluster to be declared a detection,
# for bigger clusters the program raises the detection threshold, ,
# and either splits the cluster into 2 or shrinks it down to the required size,
  Detection_Max_Area         = 20,
# the minimum number of pixels in a cluster to be declared a detection,
# smaller clusters are ignored,
  Detection_Min_Area         = 4,
  Detection_Threshold        = 5.0,
#  The options for Input_Type  are 'image_input' and  'snr_input',
  Input_Type  = 'image_input',
# the options for Threshold_Type are 'simple', 'combo' and 'peak',
  Threshold_Type = 'simple',
  Extended_Object_Area = 100000,
&END

&BRIGHT_DETECT
# the maximum number of pixels in a cluster to be declared a detection,
# for bigger clusters the program raises the detection threshold, ,
# and either splits the cluster into 2 or shrinks it down to the required size,
  Detection_Max_Area         = 20000,
# the minimum number of pixels in a cluster to be declared a detection,
# smaller clusters are ignored,
  Detection_Min_Area         = 2,
  Detection_Threshold        = 10.0,
#  The options for Input_Type  are 'image_input' and  'snr_input',
  Input_Type  = 'image_input',
# the options for Threshold_Type are 'simple', 'combo' and 'peak',
  Threshold_Type = 'simple',
  Min_Coverage = 7,
&END

&SOURCESTIMATE
# 3 options, 'image_list' is the only option acceptable here,
  InputType = 'image_list',
# the size of the area in the input image to be fitted with PRF, in input image pixels,
# If using run_fit_radius, must comment out the two following keywords,
  Fitting_Area_X = 7,
  Fitting_Area_Y = 7,
# maximum number of point sources to use in an attempt to deblend a detection,
  Max_Number_PS = 2,
# the maximum acceptable value of chi^2/degree_of_freedom,
  Chi_Threshold = 6.,
# positive number excludes point sources in the edge around the input image N_Edge pixels wide from fitting,
# negative number appends an edge around the input images N_Edge pixles wide to include the point sources into fitting,
# default 0,
  N_Edge = 4,
# the Resample Factors are the ratios of the image pixel size to the PRF sampling size,
  PRF_ResampleX_Factor      = 4,
  PRF_ResampleY_Factor      = 4,
#the number of fitting iterations to perform after Chi_Threshold has been reached, default = 0,
  Max_N_Success_Iteration = 1000,
#the relative change in chi2/dof to achive after Chi_Threshold has been reached, default = 0.001,
  MinimizeFtolSuccess = 0.0001,
  DitherPixelFraction = 0.02,
  DitherFluxFraction = 0.5,
  Background_Fit = 0,
&END   

&APERTURE
  N_Apertures = 3,
  Aperture_Radius_1 = 1.23,
  Aperture_Radius_2 = 2.45,
  Aperture_Radius_3 = 5.306,
  Use_Annulus = 1,
  Min_Number_Pixels = 10,
  Annulus_Compute_Type = 'mode',
  Inner_Radius = 8.16,
  Outer_Radius = 13.06,
&END