###-Meta-Data-###:Flow=edu.caltech.ipac.sirtf.mopexUI.modules.apex.ApexFlow
###-Meta-Data-###:User-Description=Apex Processing Flow
###-Meta-Data-###:FlowActive=true

have_uncertainties = 1
compute_uncertainties_internally = 0
run_fiducial_image_frame = 1
run_mosaic_interp = 1
run_mosaic_coadder = 1
run_mosaic_combiner = 1
run_detect_medfilter = 1
run_pointsourceprob = 1
run_gaussnoise = 1
run_bright_detect = 0
run_detect = 1
run_extract_medfilter = 1
run_fit_radius = 1
run_select_detect = 0
run_sourcestimate = 1
run_aperture = 1
run_select = 1
sigma_weighted_coadd = 0
create_unc_mosaic = 1
delete_intermediate_files = 0

USE_REFINED_POINTING = 0

use_psp_to_detect = 1
use_background_subtracted_image_for_fitting = 1
use_background_subtracted_image_for_aperture = 0

select_conditions = "SNR > 6.0 and deblend ! NO and deblend ! PO and deblend ! AO and deblend ! PAO"
select_columns = "srcid,detid,RA,delta_RA,Dec,delta_Dec,delta_RAD,x,delta_x,y,delta_y,delta_xy,flux,delta_flux,SNR,chi2/dof,ps_chi2/dof,status,deblend,aperture1,aperture2,aperture3,bad_pix1,bad_pix2,bad_pix3"

MOSAIC_PIXEL_SIZE_X = -5.0E-4
MOSAIC_PIXEL_SIZE_Y = 5.0E-4

#OUTPUT_DIR = output_apex_PUI

#IMAGE_STACK_FILE_NAME = PUIbcd.txt 
#SIGMALIST_FILE_NAME = PUIunc.txt
#DCE_STATUS_MASK_LIST = PUImsk.txt

MOSAIC_PRF_file_name = b0_prf_red.fits
PRF_file_name = b0_prf_red.fits

DCE_Status_Mask_Fatal_BitPattern = 16776
PMask_Fatal_BitPattern = 17024
RMask_Fatal_BitPattern = 7

&SNESTIMATORIN
Read_Noise = 90.0,
Confusion_Sigma = 0.0,
Gain = 1290.0,
&END

&FIDUCIALIMAGEFRAMEIN
CROTA2 = 0.0,
Coordinate_System = 'J2000',
Projection_Type = 'TAN',
Edge_Padding = 100,
&END

&MOSAICINTIN
INTERP_METHOD = 1,
&END

&MOSAICCOADDIN
TILEMAX_Y = 2000,
TILEMAX_X = 2000,
&END

&DETECT_MEDFILTER
Window_Y = 21,
Window_X = 21,
N_Outliers_Per_Window = 10,
&END

&POINTSOURCEPROB
PRF_ResampleX_Factor = 4,
PRF_ResampleY_Factor = 4,
Apriori_Probability = 0.1,
PRF_Xsize = 3,
PRF_Ysize = 3,
&END

&PSP_GAUSSNOISE
Window_X = 21,
Window_Y = 21,
N_Outliers_Per_Window = 10,
&END

&GAUSSNOISE
Window_X = 21,
Window_Y = 21,
N_Outliers_Per_Window = 10,
Max_BadPixels_OutputImage = 1.0,
Min_GoodNeighbors_Number = 4,
Min_Good_Pixels_In_Window = 9,
&END

&BRIGHT_DETECT
Detection_Min_Area = 0,
Detection_Threshold = 0,
Detection_Max_Area = 9,
Threshold_Type = 'simple',
&END

&DETECT
Detection_Threshold = 3.0,
Input_Type = 'image_input',
Detection_Max_Area = 20,
Detection_Min_Area = 3,
Threshold_Type = 'simple',
Extended_Object_Area = 200,
&END

&APEXMOSAICCOMBINER
&END

&EXTRACT_MEDFILTER
Window_X = 21,
Window_Y = 21,
N_Outliers_Per_Window = 10,
&END

&FIT_RADIUS
&END

&SELECTDETECT
&END

&SOURCESTIMATE
MinimizeFtolSuccess = 1.0e-05,
MinimizeFtol = 1.0E-04,
Max_Number_PS = 1,
Chi_Threshold = 3.0,
Max_N_Iteration = 50000,
#Fitting_Area_X = 5,
#Fitting_Area_Y = 5,
InputType = 'tile_map',
PRF_ResampleX_Factor = 4,
PRF_ResampleY_Factor = 4,
DitherPixelFraction = 0.1,
Max_N_Success_Iteration = 1000,
Chi2_Improvement = 1.0,
DitherFluxFraction = 0.8,
DeblendDitherPixelFraction = 1.0,
N_Edge = 4,
Background_Fit = 0,
Random_Fit = 0,
&END

&APERTURE
Annulus_Compute_Type = 'mode',
N_Apertures = 3,
Use_Annulus = 1,
Min_Number_Pixels = 9,
Inner_Radius = 10,
Outer_Radius = 15,
Aperture_Radius_1 = 2.0,
Aperture_Radius_2 = 3.0,
Aperture_Radius_3 = 5.0,
&END

&SELECT
&END