###-Meta-Data-###:Flow=edu.caltech.ipac.sirtf.mopexUI.modules.mosaic.MosaicFlow
###-Meta-Data-###:User-Description=Mosaic Processing Flow
###-Meta-Data-###:FlowActive=true


have_uncertainties = 1
compute_uncertainties_internally = 0
run_fiducial_image_frame = 1
run_mosaic_interp = 1
run_mosaic_covg = 1
run_medfilter = 1
run_mosaic_outlier = 1
run_detect_outlier = 1
run_mosaic_proj = 1
run_mosaic_dual_outlier = 1
run_level = 1
run_mosaic_rmask = 1
run_mosaic_reinterp = 1
run_mosaic_coadder = 1
run_mosaic_combiner = 1
NICE = 0
delete_intermediate_files = 0
save_namelist = 1
overwrite_dmask = 0
verbose = 1

USE_FLIPPED_PMASK = 0

USE_OUTLIER_FOR_RMASK = 1
USE_DUAL_OUTLIER_FOR_RMASK = 1

USE_REFINED_POINTING = 0

# Use 1.22 arcsecond pixels
MOSAIC_PIXEL_SIZE_X = -0.00033889
MOSAIC_PIXEL_SIZE_Y = 0.00033889

#OUTPUT_DIR = mosaic_I3

#IMAGE_STACK_FILE_NAME = I3_bcd.txt
#SIGMALIST_FILE_NAME = I3_bunc.txt
#DCE_STATUS_MASK_LIST = I3_bimsk.txt
# Pmask available at http://ssc.spitzer.caltech.edu/irac/products/pmask.html
#PMASK_FILE_NAME = cal/I3_pmask.fits

# If using dmask:
#DCE_Status_Mask_Fatal_BitPattern = 32544
# If using imask: (bits 3, 8-14)
DCE_Status_Mask_Fatal_BitPattern = 32520
# bits 7-10,14 
PMask_Fatal_BitPattern = 18304
# bits 2,1,0
RMask_Fatal_BitPattern = 7

&FIDUCIALIMAGEFRAMEIN
# Edge_Padding in pixels,
  Edge_Padding = 100,
# Orientation used by FIF, A means choose optimum,
  CROTA2 = A,
&END

&MOSAICINTIN 
# INTERP_METHOD = 1(default), 2(Drizzle), 3(Grid),
  INTERP_METHOD = 1,
# used by Drizzle,
#  DRIZ_FAC = 0.8,
# used by Grid,
#  GRID_RATIO = 2,
&END

&MOSAICCOVGIN
  TILEMAX_X = 2000,
  TILEMAX_Y = 2000,
&END

&MEDFILTER
  Window_X = 45,
  Window_Y = 45,
  N_Outliers_Per_Window = 50,
&END

&SNESTIMATORIN
# Approximate for 12sec,
#  Gain = 170,
#  Read_Noise = 8.8,
#  Confusion_Sigma = 8.7,
&END

&MOSAICOUTLIERIN
  THRESH_OPTION = 1,
  BOTTOM_THRESHOLD = 5., 
  TOP_THRESHOLD = 5., 
  MIN_PIX_NUM = 3,
  TILE_XSIZ = 1000,
  TILE_YSIZ = 1000, 
&END

&DETECT
# the maximum number of pixels in a cluster to be declared a detection,
# for bigger clusters the program raises the detection threshold, 
# and either splits the cluster into 2 or shrinks it down to the required size,
  Detection_Max_Area         = 100,
# the minimum number of pixels in a cluster to be declared a detection,
# include all the clusters here, since we are looking for radhits,
  Detection_Min_Area         = 0,
  Detection_Threshold        = 4,
&END

&MOSAICPROJIN
&END

&MOSAICDUALOUTLIERIN
  MAX_OUTL_IMAGE = 1,
  MAX_OUTL_FRAC = 0.5,
  TILE_XSIZ = 1000, 
  TILE_YSIZ = 1000, 
&END

&LEVEL
  Threshold_Ratio   = 0.5,
# (Optional, default is 0.500000),
&END

&MOSAICRMASKIN
  RM_THRESH = 0.8,
  MIN_COVERAGE = 3,
  MAX_COVERAGE = 100,
  REFINE_OUTLIER = 1,
&END

&MOSAICREINTIN
&END

&MOSAICCOADDIN
  TILEMAX_X = 2000, 
  TILEMAX_Y = 2000, 
&END