###-Meta-Data-###:Flow=edu.caltech.ipac.sirtf.mopexUI.modules.mosaic.MosaicFlow
###-Meta-Data-###:User-Description=Mosaic Processing Flow
###-Meta-Data-###:FlowActive=true


have_uncertainties = 1
compute_uncertainties_internally = 0
run_fiducial_image_frame = 1
run_mosaic_interp = 1
run_mosaic_covg = 1
run_mosaic_outlier = 1
run_mosaic_rmask = 1
run_mosaic_reinterp = 1
run_mosaic_coadder = 1
run_mosaic_combiner = 1
NICE = 0
verbose = 1
delete_intermediate_files = 0

USE_OUTLIER_FOR_RMASK = 1
USE_DUAL_OUTLIER_FOR_RMASK = 0

USE_REFINED_POINTING = 0

#Pipeline uses MOSAIC_PIXEL_RATIO_X,Y = 1 which does not produce square pixels
#To produce mosaic with square pixels, 4 arcsec in size, use
MOSAIC_PIXEL_SIZE_X = -0.00111111
MOSAIC_PIXEL_SIZE_Y = 0.00111111

#OUTPUT_DIR = mosaic_M2

#IMAGE_STACK_FILE_NAME = M2_bcd.txt
#SIGMALIST_FILE_NAME = M2_bunc.txt
#DCE_STATUS_MASK_LIST = M2_bmask.txt
# Pmask available at http://ssc.spitzer.caltech.edu/mips/products/mipsge_pmask.html
#PMASK_FILE_NAME = cal/mips70_pmask.fits

#bits,0,11,12,13,14==>30721
#If igoring extrapolated stim solutions set bit-4 (add 16)
#If ignoring data near stim set bit-5 (add 32)
DCE_Status_Mask_Fatal_BitPattern = 30721

#to drop all questionable pixels: bits,2,8,14==>16644
#to drop bad half of array, bad pixels, nonlinearity-affected ones:
# bits,3,8,14==>16648
#to drop bad half of array, bad pixels: bits,8,14==>16640
#If keeping bad half of array, unset bit-8 (subtract 256)
PMask_Fatal_BitPattern =  16648

#use 2 for Ge (bits 0=single frame, 1=normal time outlier, 2=dual, 3=box)
#use 3 for Si
RMask_Fatal_BitPattern = 2

&FIDUCIALIMAGEFRAMEIN
   Edge_Padding = 60,
   CROTA2 = A,
 &END

&MOSAICINTIN 
   INTERP_METHOD = 1,
&END

&MOSAICCOVGIN
&END

&MOSAICOUTLIERIN
   THRESH_OPTION = 1,
   BOTTOM_THRESHOLD = 3.0, 
   TOP_THRESHOLD = 3.0, 
   MIN_PIX_NUM = 3, 
   TILE_XSIZ = 500,
   TILE_YSIZ = 500,
&END

&MOSAICRMASKIN
   RM_THRESH = 0.5,
   MIN_COVERAGE = 3,
   MAX_COVERAGE = 100,
   MASK_RH_BIT = 9,
&END

&MOSAICREINTIN
&END

&MOSAICCOADDIN
   TILEMAX_X = 2000, 
   TILEMAX_Y = 2000, 
&END